Dating the time of origin of major clades

We calibrate the molecular clock using both fossils and the New Zealand–Antarctica vicariance event described above, but with an updated interpretation of the time frame of this geological event [].

Unlike many previous analyses, we also incorporate the uncertainty in these calibrations, and assess the sensitivity of our age estimates to different interpretations of the New Zealand–Antarctica vicariance event.: Table S1).

The avian Order Passeriformes is an enormously species-rich group, which comprises almost 60% of all living bird species.

This diverse order is believed to have originated before the break-up of Gondwana in the late Cretaceous.

We used partition-specific rate multipliers with a Dirichlet-distributed prior to allow the overall evolutionary rates to differ among partitions.

For all analyses, four Metropolis-coupled chains (temperature constant set to 0.1) were run for a minimum of 30 million generations, sampling every 1,000th generation.

Under this assumption, the argument for a Cretaceous origin of passerines becomes circular.

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The systematic relationships, early evolution and biogeography of passerines have long been debated among avian taxonomists.

Under the current paradigm, passerines arose on the southern supercontinent Gondwana and major passerine lineages became isolated with the continental break-up.

This hypothesis rests on an interpretation of the modern distributions of the major passerine clades: the New World suboscines in South and Central America (a dispersal to North America seems to have been facilitated by the formation of the Isthmus of Panama 3 Mya), the Old World suboscines in tropical Africa and Asia (except , which occurs in west Colombia), and all basal members of the oscines in the Australo–Papuan region.

Second, we aim to present age estimates for major groups of passerines, which can be used as secondary calibration points in future phylogenetic studies of passerines at lower taxonomic levels.

Our estimates of the passerine phylogeny and evolutionary time-scale are based on 7,193 bp obtained from seven nuclear genes.

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